|
|
@@ -295,14 +295,14 @@ An article about computational science in a scientific publication is
|
|
|
not the scholarship itself, it is merely advertising of the
|
|
|
scholarship. The actual scholarship is the complete software
|
|
|
development environment and the complete set of instructions which
|
|
|
-generated the figures.
|
|
|
+generated the figures. -- D. Donoho
|
|
|
#+end_quote
|
|
|
--- D. Donoho
|
|
|
|
|
|
-[[http://reproducibleresearch.net/index.php/Main_Page][Reproducible Research]] (RR) is the practice of distributing the data
|
|
|
-and functions referenced in a paper into the paper itself, so that
|
|
|
-each copy of the paper is not only a document describing the research,
|
|
|
-but is also an executable reproducing the research.
|
|
|
+[[http://reproducibleresearch.net/index.php/Main_Page][Reproducible Research]] (RR) is the practice of distributing along with
|
|
|
+an article of research all data, code, and tools required to reproduce
|
|
|
+the results discussed in the paper. As such the paper becomes not
|
|
|
+only a document describing the research but a complete laboratory
|
|
|
+reproducing the research.
|
|
|
|
|
|
Org-mode already has exceptional support for [[http://orgmode.org/manual/Exporting.html#Exporting][exporting to html and
|
|
|
LaTeX]]. Org-babel makes Org-mode a tool for RR by *activating* the
|
|
|
@@ -313,10 +313,10 @@ recreate your results, and perform their own analysis.
|
|
|
|
|
|
Existing RR tools like [[http://en.wikipedia.org/wiki/Sweave][Sweave]] provide for the embedding of [[http://www.r-project.org/][R]] code into
|
|
|
LaTeX documents. While this is very useful, such documents often
|
|
|
-still require a large degree of "glue" in the form of external shell
|
|
|
-scripts, python code, and Makefiles. To my knowledge Org-babl is the
|
|
|
-only RR tool which allows multiple languages and data to coexist and
|
|
|
-cooperate inside of a single document.
|
|
|
+still require a large degree of "glue code" in the form of external
|
|
|
+shell scripts, python scripts, and Makefiles. To my knowledge
|
|
|
+Org-babl is the only RR tool which allows multiple languages and data
|
|
|
+to coexist and cooperate inside of a single document.
|
|
|
|
|
|
* Literate programming
|
|
|
:PROPERTIES:
|