Browse Source

Revert org.texi back to the state before I mistakenly merged the babel branch

Carsten Dominik 15 years ago
parent
commit
57afeb8585
1 changed files with 3 additions and 1229 deletions
  1. 3 1229
      doc/org.texi

+ 3 - 1229
doc/org.texi

@@ -107,7 +107,6 @@ license to the document, as described in section 6 of the license.
 * Markup::                      Prepare text for rich export
 * Markup::                      Prepare text for rich export
 * Exporting::                   Sharing and publishing of notes
 * Exporting::                   Sharing and publishing of notes
 * Publishing::                  Create a web site of linked Org files
 * Publishing::                  Create a web site of linked Org files
-* Working With Source Code::    Using Org for literate programming, reproducible research and code evaluation.
 * Miscellaneous::               All the rest which did not fit elsewhere
 * Miscellaneous::               All the rest which did not fit elsewhere
 * Hacking::                     How to hack your way around
 * Hacking::                     How to hack your way around
 * MobileOrg::                   Viewing and capture on a mobile device
 * MobileOrg::                   Viewing and capture on a mobile device
@@ -500,7 +499,6 @@ example as:
 @r{@bullet{} a basic database application}
 @r{@bullet{} a basic database application}
 @r{@bullet{} a simple hypertext system, with HTML and La@TeX{} export}
 @r{@bullet{} a simple hypertext system, with HTML and La@TeX{} export}
 @r{@bullet{} a publishing tool to create a set of interlinked webpages}
 @r{@bullet{} a publishing tool to create a set of interlinked webpages}
-@r{@bullet{} an environment for literate programming}
 @end example
 @end example
 
 
 Org's automatic, context-sensitive table editor with spreadsheet
 Org's automatic, context-sensitive table editor with spreadsheet
@@ -7942,7 +7940,7 @@ your agenda for the current week, all TODO items that carry the tag
 @samp{home}, and also all lines tagged with @samp{garden}.  Finally the
 @samp{home}, and also all lines tagged with @samp{garden}.  Finally the
 command @kbd{C-c a o} provides a similar view for office tasks.
 command @kbd{C-c a o} provides a similar view for office tasks.
 
 
-@node Setting Options, Block agenda, Custom agenda views
+@node Setting Options,  , Block agenda, Custom agenda views
 @subsection Setting options for custom commands
 @subsection Setting options for custom commands
 @cindex options, for custom agenda views
 @cindex options, for custom agenda views
 
 
@@ -10136,7 +10134,7 @@ and the description from the body (limited to
 How this calendar is best read and updated, depends on the application
 How this calendar is best read and updated, depends on the application
 you are using.  The FAQ covers this issue.
 you are using.  The FAQ covers this issue.
 
 
-@node Publishing, Working With Source Code, Exporting, Top
+@node Publishing, Miscellaneous, Exporting, Top
 @chapter Publishing
 @chapter Publishing
 @cindex publishing
 @cindex publishing
 @cindex O'Toole, David
 @cindex O'Toole, David
@@ -10648,1231 +10646,7 @@ above, or by customizing the variable @code{org-publish-use-timestamps-flag}.
 This may be necessary in particular if files include other files via
 This may be necessary in particular if files include other files via
 @code{#+SETUPFILE:} or @code{#+INCLUDE:}.
 @code{#+SETUPFILE:} or @code{#+INCLUDE:}.
 
 
-@node Working With Source Code, Miscellaneous, Publishing, Top
-@comment  node-name,  next,  previous,  up
-@comment Working With Source Code, Miscellaneous, Publishing, Top
-@chapter ``Working With Source Code'' or ``Embedded Source Code''
-
-Source code can be included in Org-mode documents using a @samp{src} block:
-
-@example
-#+BEGIN_SRC emacs-lisp
-(defun org-xor (a b)
-   "Exclusive or."
-   (if a (not b) b))
-#+END_SRC
-@end example
-
-Org provides the following features for working with blocks of code:
-
-@itemize @bullet
-@item
-Editing in the appropriate Emacs major-mode (@ref{Editing Source Code})
-@item
-Export with appropriate markup (@ref{Exporting Code Blocks})
-@item
-Extraction (``tangling'') into pure code files. (@ref{Extracting Source Code})
-@item
-Code execution, with results captured in the Org buffer (@ref{Evaluating Code Blocks})
-@item
-Using code blocks in table formulas
-@end itemize
-
-@menu
-* Structure of Code Blocks::
-* Editing Source Code::         
-* Exporting Code Blocks::       
-* Extracting Source Code::      
-* Evaluating Code Blocks::      
-@end menu
-
-
-@node Structure of Code Blocks, Editing Source Code, Working With Source Code, Working With Source Code
-@comment  node-name,  next,  previous,  up
-@comment  Structure of Code Blocks, Editing Source Code, Working With Source Code, Working With Source Code
-@section Structure of Code Blocks
-
-The structure of code blocks is as follows:
-
-@example
-#+srcname: <name>
-#+begin_src <language> <switches> <header arguments>
-<body>
-#+end_src
-@end example
-
-@table @code
-@item <name>
-An optional name for the block (see @ref{Evaluating Code Blocks})
-@item <language>
-The language of the code in the block.
-@item <switches>
-Optional links FIXME link/relocate switches discussion in @ref{Literal examples}
-@item <header arguments>
-Optional header arguments control many aspects of evaluation, export and
-tangling of source code blocks. See the [[header-arguments][Header
-Arguments]] section. Header arguments can also be set on a per-buffer or
-per-subtree basis using properties.
-@item <body>
-The code
-@end table
-
-@node Editing Source Code, Exporting Code Blocks, Structure of Code Blocks, Working With Source Code
-@comment  node-name,  next,  previous,  up
-@comment  Editing Source Code, Exporting Code Blocks, Structure of Code Blocks, Working With Source Code
-@section Editing Source Code
-
-Use @kbd{C-c '} to edit the code block at point. This brings up a language
-major-mode edit buffer containing the body of the code block. Saving this
-buffer will write the new contents back to the Org buffer. Use @kbd{C-c '}
-again to exit.
-
-The edit buffer has a minor mode active called @code{org-src-mode}. The
-following variables can be used to configure the behavior of the edit
-buffer. See also the customization group @code{org-edit-structure} for futher
-configuration options.
-
-@table @code
-@item org-src-lang-modes
-If an emacs major-mode named @code{<lang>-mode} exists, where
-@code{<lang>} is the language named in the header line of the code block,
-then the edit buffer will be placed in that major-mode. This variable
-can be used to map arbitrary language names to existing major modes.
-@item org-src-window-setup
-Controls the way Emacs windows are rearranged when the edit buffer is created.
-@item org-src-preserve-indentation
-This variable is expecially useful for tangling languages such as
-python, in which whitespace indentation in the output is critical.
-@item org-src-ask-before-returning-to-edit-buffer
-By default, Org will ask before returning to an open edit buffer. Set
-to a non-nil value to switch without asking.
-@end table
-
-@node Exporting Code Blocks, Extracting Source Code, Editing Source Code, Working With Source Code
-@comment  node-name,  next,  previous,  up
-@comment  Exporting Code Blocks, Extracting Source Code, Editing Source Code, Working With Source Code
-@section Exporting Code Blocks
-
-By default, code blocks export to HTML with the appearance of the fontified
-language major-mode Emacs buffer
-
-FIXME: say something more knowledgable about the HTML/CSS output.
-
-A similar effect is possible with LaTeX if you turn on
-the option @code{org-export-latex-listings} and make sure that the listings
-package is included by the LaTeX header FIXME: be more specific about latex
-config.
-
-FIXME: This duplicated discussion in @ref{Literal examples}. Add
-documentation of relevant switches.
-
-The @code{:exports} header argument can be used to specify non-default export behavior:
-
-@table @code
-@item :exports results
-On export, the code block will be executed and the block will be replaced by
-the results of the code block (as determined by the values of other header
-arguments such as @code{results} and @code{file}.
-@item :exports both
-On export, the code block will be executed and the exported material will
-contain the code, followed by the results.
-@item :exports code
-The default. The body of the code block is exported as described above.
-@end table
-
-@node Extracting Source Code, Evaluating Code Blocks, Exporting Code Blocks, Working With Source Code
-@comment  node-name,  next,  previous,  up
-@comment  Extracting Source Code, Evaluating Code Blocks, Exporting Code Blocks, Working With Source Code
-@section Extracting Source Code
-
-Creating monolingual code files by extracting code from source blocks is
-referred to as ``tangling''.
-
-Header arguments:
-@table @code
-@item :tangle no
-The default.
-@item :tangle yes
-Include block in tangled output. The output file name is the name of the org
-file with the extension @samp{.org} replaced by the extension for the block language.
-@item :tangle filename
-Include block in tangled output to file @samp{filename}
-@end table
-
-Functions:
-@table @code
-@item org-babel-tangle @key{C-c M-b t}
-Tangle the current file
-@item org-babel-tangle-file
-Choose a file to tangle
-@end table
-
-Variables:
-@table @code
-@item org-babel-tangle-langs
-FIXME: This variable may have been changed recently
-@end table
-
-
-
-@node Evaluating Code Blocks,  , Extracting Source Code, Working With Source Code
-@comment  node-name,  next,  previous,  up
-@comment  Evaluating Code Blocks,  , Extracting Source Code, Working With Source Code
-@section Evaluating Code Blocks
-
-For many languages, blocks of code can be evaluated, with the results being
-returned to the org buffer (or linked to from the org buffer).
-
-FIXME: Are we going to use ``evaluate'' or ``execute''
-
-This syntax can be expanded by naming the source code block.
-
-@example
-#+sourcename
-#+begin_src language header-arguments switches
-body
-#+end_src
-@end example
-
-- name :: This name is associated with the source code block.  This is
-     similar to the =#+tblname= lines that can be used to name tables
-     in Org-mode files.  Referencing the name of a source code
-     block makes it possible to evaluate the block from other places in
-     the file, other files, or inside Org-mode tables.  It
-     is also possible to pass arguments to a source code block through
-     this =#+source:= line (see [[alternate-argument-syntax][Alternate argument syntax]]).
-
-@subsection Library of Babel
-[[file:library-of-babel.org][Library of Babel]] functions can be called using the following syntax.
-
-@example
-#+lob: R-plot(data=R-plot-example-data)
-@end example
-
-@subsection Aliases
-   Keyword aliases are intended to make Org-babel feel natural to
-   programmers fluent in a variety of languages.  For example,
-   @example
-     #+srcname: alias-example
-     #+begin_src emacs-lisp
-       '((call lob)
-         (source function srcname)
-         (results resname))
-     #+end_src
-
-     #+results: alias-example
-     | call    | lob      |         |
-     | source  | function | srcname |
-     | results | resname  |         |
-   @end example
-     - =#+srcname:= can be replaced with either of two aliases,  =#+source:= or =#+function:=.
-     - =#+results:= can be replaced with its alias, =#+resname:=.
-
-   When calling Library of Babel functions, as in the following
-   example, there are two acceptable keywords.  The =#+lob= call in
-   the example could be replaced with its alias, =#+call=.
-   @example
-     #+lob: R-plot(data=R-plot-example-data)
-   @end example
-
-@subsection Languages
-  :PROPERTIES:
-  :CUSTOM_ID: languages
-  :END:
-
-Org-babel can evaluate/execute/compile the following languages. See the
-language specific documentation on Worg for details.
-
-FIXME: How are we going to refer to the external documentation?
-
-@c BEGIN RECEIVE ORGTBL org-babel-lang-table
-@multitable @columnfractions 0.583 0.417
-@item Language @tab Identifier
-@item Asymptote @tab asymptote
-@item C @tab C
-@item Clojure @tab clojure
-@item css @tab css
-@item ditaa @tab ditaa
-@item Graphviz @tab dot
-@item Emacs Lisp @tab emacs-lisp
-@item gnuplot @tab gnuplot
-@item Haskell @tab haskell
-@item Matlab @tab matlab
-@item LaTeX @tab latex
-@item Objective Caml @tab ocaml
-@item Octave @tab octave
-@item OZ @tab oz
-@item Perl @tab perl
-@item Python @tab python
-@item R @tab R
-@item Ruby @tab ruby
-@item Sass @tab sass
-@item GNU Screen @tab screen
-@item shell @tab sh[fn:1]
-@item SQL @tab sql
-@end multitable
-@c END RECEIVE ORGTBL org-babel-lang-table
-
-@ignore
-The original table from reference.org is below; I'm just using the first column for now.
-
-#+ORGTBL: SEND org-babel-lang-table orgtbl-to-texinfo
-  | Language       | Identifier |
-  |----------------+------------|
-  | Asymptote      | asymptote  |
-  | C              | C          |
-  | Clojure        | clojure    |
-  | css            | css        |
-  | ditaa          | ditaa      |
-  | Graphviz       | dot        |
-  | Emacs Lisp     | emacs-lisp |
-  | gnuplot        | gnuplot    |
-  | Haskell        | haskell    |
-  | Matlab         | matlab     |
-  | LaTeX          | latex      |
-  | Objective Caml | ocaml      |
-  | Octave         | octave     |
-  | OZ             | oz         |
-  | Perl           | perl       |
-  | Python         | python     |
-  | R              | R          |
-  | Ruby           | ruby       |
-  | Sass           | sass       |
-  | GNU Screen     | screen     |
-  | shell          | sh[fn:1]   |
-  | SQL            | sql        |
-
-
-  | Language       | Documentation                                                                   | Identifier | Requirements                                                                                                                                                                                                                                                                                |
-  |----------------+---------------------------------------------------------------------------------+------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-  | Asymptote      | org-babel-doc-asymptote                                                         | asymptote  | [[http://asymptote.sourceforge.net/][asymptote]], [[http://asymptote.sourceforge.net/doc/Editing-modes.html][asy-mode]]                                                                                                                                                                     |
-  | C              | [[file:languages/org-babel-doc-C.org][org-babel-doc-C]]                         | C          | none                                                                                                                                                                                                                                                                                        |
-  | Clojure        | [[file:languages/org-babel-doc-clojure.org][org-babel-doc-clojure]]             | clojure    | [[http://clojure.org/][clojure]], [[http://www.emacswiki.org/emacs/clojure-mode.el][clojure-mode]], [[http://common-lisp.net/project/slime/][slime]], [[http://clojure.codestuffs.com/][swank-clojure]]                                                                                     |
-  | css            | org-babel-doc-css                                                               | css        | none                                                                                                                                                                                                                                                                                        |
-  | ditaa          | org-babel-doc-ditaa                                                             | ditaa      | [[http://ditaa.org/ditaa/][ditaa]] (bundled with Org-mode)                                                                                                                                                                                                                                  |
-  | Graphviz       | org-babel-doc-dot                                                               | dot        | [[http://www.graphviz.org/][dot]]                                                                                                                                                                                                                                                           |
-  | Emacs Lisp     | org-babel-doc-emacs-lisp                                                        | emacs-lisp | none                                                                                                                                                                                                                                                                                        |
-  | gnuplot        | org-babel-doc-gnuplot                                                           | gnuplot    | [[http://www.gnuplot.info/][gnuplot]], [[http://cars9.uchicago.edu/~ravel/software/gnuplot-mode.html][gnuplot-mode]]                                                                                                                                                                        |
-  | Haskell        | org-babel-doc-haskell                                                           | haskell    | [[http://www.haskell.org/][haskell]], [[http://projects.haskell.org/haskellmode-emacs/][haskell-mode]], [[http://www.haskell.org/haskellwiki/Haskell_mode_for_Emacs#inf-haskell.el:_the_best_thing_since_the_breadknife][inf-haskell]], [[http://people.cs.uu.nl/andres/lhs2tex/][lhs2tex]] |
-  | Matlab         | [[file:languages/org-babel-doc-octave-matlab.org][org-babel-doc-octave-matlab]] | matlab     | matlab, [[http://sourceforge.net/projects/matlab-emacs/][matlab.el]]                                                                                                                                                                                                                        |
-  | LaTeX          | [[file:languages/org-babel-doc-LaTeX.org][org-babel-doc-latex]]                 | latex      | [[http://www.latex-project.org/][latex]], [[http://www.gnu.org/software/auctex/][auctex]], [[http://www.gnu.org/software/auctex/reftex.html][reftex]]                                                                                                                                       |
-  | Objective Caml | org-babel-doc-ocaml                                                             | ocaml      | [[http://caml.inria.fr/][ocaml]], [[http://www-rocq.inria.fr/~acohen/tuareg/][tuareg-mode]]                                                                                                                                                                                                 |
-  | Octave         | [[file:languages/org-babel-doc-octave-matlab.org][org-babel-doc-octave-matlab]] | octave     | octave                                                                                                                                                                                                                                                                                      |
-  | OZ             | [[file:languages/org-babel-doc-oz.org][org-babel-doc-oz]]                       | oz         | [[http://www.mozart-oz.org/][Mozart]] which includes a major mode                                                                                                                                                                                                                           |
-  | Perl           | org-babel-doc-perl                                                              | perl       | [[http://www.perl.org/][perl]], [[http://www.emacswiki.org/emacs/CPerlMode][cperl-mode]] (optional)                                                                                                                                                                                         |
-  | Python         | org-babel-doc-python                                                            | python     | [[http://www.python.org/][python]], [[https://launchpad.net/python-mode][python-mode]] (optional)                                                                                                                                                                                           |
-  | R              | [[file:languages/org-babel-doc-R.org][org-babel-doc-R]]                         | R          | [[http://www.r-project.org/][R]], [[http://ess.r-project.org/][ess-mode]]                                                                                                                                                                                                                   |
-  | Ruby           | org-babel-doc-ruby                                                              | ruby       | [[http://www.ruby-lang.org/][ruby]], [[http://www.ruby-lang.org/][irb]], [[http://github.com/eschulte/rinari/raw/master/util/ruby-mode.el][ruby-mode]], [[http://github.com/eschulte/rinari/raw/master/util/inf-ruby.el][inf-ruby mode]]                                                    |
-  | Sass           | org-babel-doc-sass                                                              | sass       | [[http://sass-lang.com/][sass]], [[http://github.com/nex3/haml/blob/master/extra/sass-mode.el][sass-mode]]                                                                                                                                                                                  |
-  | GNU Screen     | [[file:languages/org-babel-doc-screen.org][org-babel-doc-screen]]               | screen     | [[http://www.gnu.org/software/screen/][screen]], a terminal                                                                                                                                                                                                                                 |
-  | shell          | org-babel-doc-sh                                                                | sh[fn:1]   | a shell                                                                                                                                                                                                                                                                                     |
-  | SQL            | org-babel-doc-sql                                                               | sql        | none                                                                                                                                                                                                                                                                                        |
-
-
-@end ignore
-
-To add support for a particular language to your Org-babel installation
-first make sure that the requirements of the language are met, then add a
-line like the following to your Emacs configuration, (replace "identifier"
-with one of the entries in the Identifier column of the table).
-
-@example
-(require 'org-babel-identifier)
-@end example
-
-@section Header Arguments
-    :PROPERTIES:
-    :CUSTOM_ID: header-arguments
-    :END:
-
-Definitions of all Org-babel header arguments are given
-[[header-argument-specific-documentation][below]].  In addition, some
-languages may add their own header arguments.  Please see the
-language-specific documentation for information on language-specific header
-arguments.
-
-@subsection Using Header Arguments
-
-The values of header arguments can be set in four different ways, each
-more specific (and having higher priority) than the last.
-
-@subsubsection System-wide
-    :PROPERTIES:
-    :CUSTOM_ID: system-wide-header-argument
-    :END:
-
- System-wide values of header arguments can be specified by
- customizing the =org-babel-default-header-args= variable:
- @example
-   org-babel-default-header-args is a variable defined in `org-babel.el'.
-   Its value is
-   ((:session . "none")
-    (:results . "replace")
-    (:exports . "code")
-    (:cache . "no")
-    (:noweb . "no"))
-
-
-   Documentation:
-   Default arguments to use when evaluating a source block.
- @end example
- [[#default-noweb]]
- For example, the following example could be used to set the default value
- of =:noweb= header arguments to =yes=.  This would have the effect of
- expanding =:noweb= references by default when evaluating source code blocks.
- @example
-   (setq org-babel-default-header-args
-         (cons '(:noweb . "yes")
-               (assq-delete-all :noweb org-babel-default-header-args)))
- @end example
-
-@subsubsection Org-mode Properties
-
-Header arguments are also read from
-[[http://orgmode.org/manual/Properties-and-Columns.html#Properties-and-Columns][Org-mode
-properties]], which can be set on a buffer-wide or per-heading basis. An
-example of setting a header argument for all code blocks in a buffer is
-
-#+begin_example 
-#+property: tangle yes
-#+end_example
-
-When properties are used to set default header arguments, they are looked up
-with inheritance, so the value of the =:cache= header argument will default
-to true in all source code blocks in the subtree rooted at the following
-heading:
-
- @example
-   * outline header
-     :PROPERTIES:
-     :cache:    yes
-     :CUSTOM_ID: property-set-header-arguments
-     :END:
- @end example
- Properties defined in this way override the properties set in
- =org-babel-default-header-args=.  It is convenient to use the
- =org-set-property= function bound to =C-c C-x p= to set properties
- in Org-mode documents.
-
-@subsubsection Source Code Block
-    :PROPERTIES:
-    :CUSTOM_ID: single-block-header-arguments
-    :END:
- The most common way to assign values to header arguments is at the
- source code block level.  This can be done by listing a sequence of
- header arguments and their values as part of the =#+begin_src=
- line.  Properties set in this way override both the values of
- =org-babel-default-header-args= and header argument specified as
- properties.  In the following example, the
- =:results= header argument is set to =silent=, meaning the results
- of execution will not be inserted in the buffer, and the =:exports=
- header argument is set to =code=, meaning only the body of the
- source code block
- will be preserved on export to HTML or LaTeX.
- @example
-   #+source: factorial
-   #+begin_src haskell :results silent :exports code
-     fac 0 = 1
-     fac n = n * fac (n-1)
-   #+end_src
- @end example
-
-@subsection Specific Header Arguments
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-specific-documentation
-    :END:
-
-@subsubsection =:var=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-var
-    :END:
-
-    The =:var= header argument is used to pass arguments to
-    source code blocks.  The specifics of how arguments are included
-    in a source code block are language specific and are
-    addressed in the language-specific documentation. However, the
-    syntax used to specify arguments is the same across all
-    languages.  The values passed to arguments can be or
-    - literal values
-    - values from org-mode tables
-    - the results of other source code blocks
-
-    These values can be indexed in a manner similar to arrays -- see
-    [[var-argument-indexing][argument indexing]].
-
-    The following syntax is used to pass arguments to source code
-    blocks using the =:var= header argument.
-
-    @example
-      :var name=assign
-    @end example
-
-    where =assign= can take one of the following forms
-
-    - literal value :: either a string ="string"= or a number =9=.
-    - reference :: a table name:
-
-         @example
-           #+tblname: example-table
-           | 1 |
-           | 2 |
-           | 3 |
-           | 4 |
-
-           #+source: table-length
-           #+begin_src emacs-lisp :var table=example-table
-             (length table)
-           #+end_src
-
-           #+results: table-length
-           : 4
-         @end example
-
-         a source code block name, as assigned by =#+srcname:=,
-         followed by parentheses:
-
-         @example
-           #+begin_src emacs-lisp :var length=table-length()
-             (* 2 length)
-           #+end_src
-
-           #+results:
-           : 8
-         @end example
-
-         In addition, an argument can be passed to the source code
-         block referenced by =:var=.  The argument is passed within
-         the parentheses following the source code block name:
-
-         @example
-           #+source: double
-           #+begin_src emacs-lisp :var input=8
-             (* 2 input)
-           #+end_src
-
-           #+results: double
-           : 16
-
-           #+source: squared
-           #+begin_src emacs-lisp :var input=double(input=1)
-             (* input input)
-           #+end_src
-
-           #+results: squared
-           : 4
-         @end example
-
-@subsubheading alternate argument syntax
-     :PROPERTIES:
-     :CUSTOM_ID: alternate-argument-syntax
-     :END:
-
-     It is also possible to specify arguments in a potentially more
-     natural way using the =#+source:= line of a source code block.
-     As in the following example arguments can be packed inside of
-     parenthesis following the source name.
-     @example
-       #+source: double(input=0)
-       #+begin_src emacs-lisp
-         (* 2 input)
-       #+end_src
-     @end example
-
-**** indexable variable values
-     :PROPERTIES:
-     :CUSTOM_ID: var-argument-indexing
-     :END:
-
-     It is possible to assign a portion of a value to a
-     variable in a source block.  The following example
-     assigns the second and third rows of the table
-     =example-table= to the variable =data=:
-
-     @example
-       :var data=example-table[1:2]
-     @end example
-
-     *Note:* ranges are indexed using the =:= operator.
-
-     *Note:* indices are 0 based.
-
-     The following example assigns the second column of the
-     first row of =example-table= to =data=:
-
-     @example
-       :var data=example-table[0,1]
-     @end example
-
-     It is possible to index into the results of source code blocks
-     as well as tables.  Any number of dimensions can be indexed.
-     Dimensions are separated from one another by commas.
-
-     For more information on indexing behavior see the documentation
-     for the =org-babel-ref-index-list= function -- provided below.
-
-     @example
-       org-babel-ref-index-list is a Lisp function in `org-babel-ref.el'.
-
-       (org-babel-ref-index-list INDEX LIS)
-
-       Return the subset of LIS indexed by INDEX.  If INDEX is
-       separated by ,s then each PORTION is assumed to index into the
-       next deepest nesting or dimension.  A valid PORTION can consist
-       of either an integer index, or two integers separated by a : in
-       which case the entire range is returned.
-     @end example
-
-     *Note:* In Emacs, the documentation for any function or variable
-     can be read using the =describe-function= (M-x describe
-     function) and =describe-variable= (M-x describe variable)
-     functions, respectively.
-
-@subsubsection =:results=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-results
-    :END:
-
-    There are three types of results header argument:
-    - *collection* header arguments specify how the results should be collected from
-       the source code block;
-    - *type* header arguments specify what type of result the source code block
-       will return -- which has implications for how they will be
-       inserted into the Org-mode buffer; and
-    - *handling* header arguments specify how the results of
-       evaluating the source code block should be handled.
-
-     *Note:* only one option from each type may be supplied per source code
-       block.
-
-@subsubheading collection
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-results-collection
-    :END:
-     The following options are mutually exclusive, and specify how the
-     results should be collected from the source code block.
-
-     - value :: This is the default.  The result is the value
-                of the last statement in the source code block.
-                This header argument places Org-babel in functional
-                mode.  Note that in some languages, e.g., python,
-                use of this result type requires that a =return=
-                statement be included in the body of the source code
-                block. E.g., =:results value=.
-    - output :: The result is the collection of everything printed
-                to stdout during the execution of the source code
-                block.  This header argument places Org-babel in scripting
-                mode.  E.g., =:results output=.
-
-@subsubheading type
-     The following options are mutually exclusive and specify what
-     type of results the code block will return.  By default, results
-     are inserted as either a *table* or *scalar* depending on their
-     value.
-
-     - table, vector :: The results should be interpreted as an Org-mode table.
-                        If a single value is returned, Org-babel will convert it
-                        into a table with one row and one column.  E.g., =:results
-                        value table=.
-     - scalar, verbatim :: The results should be interpreted
-          literally -- meaning they will not be converted into a table.
-          The results will be inserted into the Org-mode buffer as
-          quoted text.  E.g., =:results value verbatim=.
-     - file :: The results will be interpreted as the path to a file,
-               and will be inserted into the Org-mode buffer as a file
-               link.  E.g., =:results value file=.
-     - raw, org :: The results are interpreted as raw Org-mode code and
-                   are inserted directly into the buffer.  If the results look
-                   like a table they will be aligned as such by Org-mode.
-                   E.g., =:results value raw=.
-     - html :: Results are assumed to be HTML and will be enclosed in
-               a =begin_html= block.  E.g., =:results value html=.
-     - latex :: Results assumed to be LaTeX and are enclosed in a
-                =begin_latex= block.  E.g., =:results value latex=.
-     - code :: Result are assumed to be parseable code and are
-               enclosed in a code block.  E.g., =:results value code=.
-     - pp :: The result is converted to pretty-printed code and is
-             enclosed in a code block.  This option currently supports
-             Emacs Lisp, python, and ruby.  E.g., =:results value pp=.
-
-@subsubheading handling
-     The following results options indicate what Org-babel should do
-     with the results once they are collected.
-
-     - silent :: The results will be echoed in the minibuffer but
-                 will not be inserted into the Org-mode buffer.  E.g.,
-                 =:results output silent=.
-     - replace :: The default value.  The results will be inserted
-                  into the Org-mode buffer.  E.g., =:results output
-                  replace=.
-
-@subsubsection =:file=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-file
-    :END:
-
-    =:file= is used to specify a path for file output in which case an
-    [[http://orgmode.org/manual/Link-format.html#Link-format][org style]] =file:= link is inserted into the buffer as the
-    result. Common examples are graphical output from [[file:languages/org-babel-doc-R.org][R]], gnuplot,
-    ditaa and [[file:languages/org-babel-doc-LaTeX.org][latex]] blocks.
-
-    See the [[#header-argument-dir][=:dir= and remote execution]] section for examples.
-
-    Note that for some languages, including [[file:languages/org-babel-doc-R.org][R]], gnuplot, [[file:languages/org-babel-doc-LaTeX.org][latex]] and
-    ditaa, graphical output is sent to the specified file without the
-    file being referenced explicitly in the code block. See the
-    documentation for the individual languages for details. In
-    contrast, general purpose languages such as python and ruby
-    require that the code explicitly create output corresponding to
-    the path indicated by =:file=.
-
-    While the =:file= header argument can be used to specify the path
-    to the output file,
-
-@subsubsection =:dir= and remote execution
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-dir
-    :END:
-    =:dir= specifies the /default directory/ during code block
-    execution. If it is absent, then the directory associated with the
-    current buffer is used. In other words, supplying =:dir path=
-    temporarily has the same effect as changing the current directory
-    with =M-x cd path=, and then not supplying =:dir=. Under the
-    surface, =:dir= simply sets the value of the emacs variable
-    =default-directory=.
-
-    When using =:dir=, you should supply a relative path for [[#header-argument-file][file
-    output]] (e.g. =:file myfile.jpg= or =:file results/myfile.jpg=) in
-    which case that path will be interpreted relative to the default
-    directory.
-
-    In other words, if you want your plot to go into a folder called
-    Work in your home directory, you could use
-
-@example 
-  #+begin_src R :file myplot.png :dir ~/Work
-  matplot(matrix(rnorm(100), 10), type="l")
-  #+end_src
-@end example
-
-@subsubheading Remote execution
-     A directory on a remote machine can be specified using [[http://www.gnu.org/software/tramp/#Filename-Syntax][tramp
-     filename syntax]], in which case the code will be executed on the
-     remote machine[fn:2]. An example is
-
-@example 
-#+begin_src R :file plot.png :dir /dand@@yakuba.princeton.edu:
-  plot(1:10, main=system("hostname", intern=TRUE))
-#+end_src
-@end example
-
-Text results will be returned to the local org buffer as normal, and
-file output will be created on the remote machine with relative paths
-interpreted relative to the remote directory. An org link to the
-remote file will be created.
-
-So in the above example a plot will be created on the remote machine,
-and a link of the following form will be inserted in the org buffer:
-
-@example 
-[[file:/scp:dand@@yakuba.princeton.edu:/home/dand/plot.png][plot.png]]
-@end example
-
-Most of this functionality follows immediately from the fact that
-=:dir= sets the value of the emacs variable =default-directory=,
-thanks to [[http://www.gnu.org/software/tramp/][tramp]]. Those using XEmacs, or GNU Emacs prior to
-version 23 may need to install tramp separately in order for the
-above features to work correctly.
-
-@subsubheading Further points
-     - If =:dir= is used in conjunction with =:session=, although it
-       will determine the starting directory for a new session as
-       expected, no attempt is currently made to alter the directory
-       associated with an existing session.
-     - =:dir= should typically not be used to create files during
-       export with =:exports results= or =:exports both=. The reason
-       is that, in order to retain portability of exported material
-       between machines, during export, links inserted into the buffer
-       will *not* be expanded against default directory. Therefore, if
-       default-directory is altered using =:dir=, it it probable that
-       the file will be created in a location to which the link does
-       not point.
-@subsubsection =:exports=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-exports
-    :END:
-
-    Specify what should be included in HTML or LaTeX exports of the
-    Org-mode file.
-
-    - code :: the default.  The body of code is included
-              into the exported file.  E.g., =:exports code=.
-    - results :: the result of evaluating the code is included in the
-                  exported file. E.g., =:exports results=.
-    - both :: both the code and results are included in the exported
-               file. E.g., =:exports both=.
-    - none :: nothing is included in the exported file.  E.g.,
-               =:exports none=.
-
-@subsubsection =:tangle=
-    :PROPERTIES:
-    :CUSTOM_ID: tangle-header-arguments
-    :END:
-
-    Specify whether or not the source code block should be included
-    in tangled extraction of source code files.
-
-    - yes :: the source code block is exported to a source code file
-             named after the basename (name w/o extension) of the
-             Org-mode file.  E.g., =:tangle yes=.
-    - no :: the default.  The source code block is not
-          exported to a source code file.  E.g., =:tangle no=.
-    - other :: Any other string passed to the =:tangle= header argument
-                is interpreted as a file basename to which the block will
-                be exported.  E.g., =:tangle basename=.
-
-@subsubsection =:session=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-session
-    :END:
-
-    Start a session for an interpreted language where state is
-    preserved.  This applies particularly to the supported languages
-    python, R and ruby.
-
-    By default, a session is not started.
-
-    A string passed to the =:session= header argument will give the
-    session a name.  This makes it possible to run concurrent
-    sessions for each interpreted language.
-
-@subsubsection =:noweb=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-noweb
-    :END:
-
-    Controls the expansion of [[noweb-reference-syntax][noweb syntax]] references in a
-    source code block.  This header argument can have one of two
-    values: =yes= or =no=.
-    - =no= :: the default.  No [[noweb-reference-syntax][noweb syntax]] specific action is taken
-         on evaluating source code blocks/  However, noweb references
-         will still be expanded during tangling.
-    - =yes= :: all [[noweb-reference-syntax][noweb syntax]] references in the body of the source
-               code block will be expanded before the block is evaluated.
-
-@subsubheading Noweb Prefix Lines
-
-     Noweb insertions are now placed behind the line prefix of the
-     =<<reference>>=.
-
-     This behavior is illustrated in the following example.  Because
-     the =<<example>>= noweb reference appears behind the SQL
-     comment syntax, each line of the expanded noweb reference will
-     be commented.
-
-     This source code block:
-
-     @example
-       -- <<example>>
-     @end example
-
-
-     expands to:
-
-     @example
-       -- this is the
-       -- multi-line body of example
-     @end example
-
-     Note that noweb replacement text that does *not* contain any
-     newlines will not be affected by this change, so it is still
-     possible to use inline noweb references.
-
-     Thanks to Sébastien Vauban for this idea.
-
-@subsubsection =:cache=
-    :PROPERTIES:
-    :CUSTOM_ID: header-argument-cache
-    :END:
-
-    Controls the use of in-buffer caching of source code block
-    results to avoid re-running unchanged source code blocks.  This
-    header argument can have one of two values: =yes= or =no=.
-    - =no= :: The default.  No caching takes place and the source
-         code block will be run every time it is executed.
-    - =yes= :: every time the source code block is run a sha1 hash of
-         the code and arguments passed to the block will be
-         generated.  This hash is packed into the =#+results:= line
-         of the results and will be checked on subsequent executions
-         of the source code block.  If the source code block has not
-         changed since the last time it was evaluated, it will not be
-         re-evaluated.
-
-@section Results
-    :PROPERTIES:
-    :CUSTOM_ID: results-specification
-    :END:
-
-    The way in which results are handled depends on whether a [[header-argument-session][session]]
-    is invoked, as well as on whether
-    [[header-argument-results-collection][=:results value=] or
-    [[header-argument-results-collection][=:results output=]] is used. The following table shows the
-    possibilities:
-
-    |                   | non-session (default)    | =:session=                          |
-    |-------------------+--------------------------+-------------------------------------|
-    | =:results value=  | value of last expression | value of last expression            |
-    | =:results output= | contents of stdout       | concatenation of interpreter output |
-
-    *Note:*  With =:results value=, the result in both =:session= and
-    non-session is returned to Org-mode as a table (a one- or
-    two-dimensional vector of strings or numbers) when appropriate.
-
-@subsection Non-session
-@subsubsection =:results value=
-      This is the default. Internally, the value is obtained by
-      wrapping the code in a function definition in the external
-      language, and evaluating that function. Therefore, code should be
-      written as if it were the body of such a function. In particular,
-      note that python does not automatically return a value from a
-      function unless a =return= statement is present, and so a
-      'return' statement will usually be required in python.
-
-      This is the only one of the four evaluation contexts in which the
-      code is automatically wrapped in a function definition.
-
-@subsubsection =:results output=
-      The code is passed to the interpreter as an external process, and
-      the contents of the standard output stream are returned as
-      text. (In certain languages this also contains the error output
-      stream; this is an area for future work.)
-
-@subsection =:session=
-@subsubsection =:results value=
-      The code is passed to the interpreter running as an interactive
-      Emacs inferior process. The result returned is the result of the
-      last evaluation performed by the interpreter. (This is obtained in
-      a language-specific manner: the value of the variable =_= in
-      python and ruby, and the value of =.Last.value= in R).
-
-@subsubsection =:results output=
-       The code is passed to the interpreter running as an interactive
-       Emacs inferior process. The result returned is the concatenation
-       of the sequence of (text) output from the interactive
-       interpreter. Notice that this is not necessarily the same as what
-       would be sent to stdout if the same code were passed to a
-       non-interactive interpreter running as an external process. For
-       example, compare the following two blocks:
-
-
-@example
-#+begin_src python :results output
-       print "hello"
-       2
-       print "bye"
-#+end_src
-
-#+resname:
-       : hello
-       : bye
-@end example
-
-       In non-session mode, the '2' is not printed and does not appear.
-@example
-#+begin_src python :results output :session
-       print "hello"
-       2
-       print "bye"
-#+end_src
-
-#+resname:
-       : hello
-       : 2
-       : bye
-@end example
-
-       But in =:session= mode, the interactive interpreter receives input '2'
-       and prints out its value, '2'. (Indeed, the other print statements are
-       unnecessary here).
-
-@section Noweb Reference Syntax
-  :PROPERTIES:
-  :CUSTOM_ID: noweb-reference-syntax
-  :END:
-
-  The [[http://www.cs.tufts.edu/~nr/noweb/][Noweb]] Literate Programming system allows named blocks of code to
-  be referenced by using the familiar Noweb syntax:
-  : <<code-block-name>>
-
-  Noweb references are handled differently during evaluation and
-  tangling.
-
-  When a document is tangled, Noweb references are replaced with the
-  named source code block.
-
-  When a source code block is evaluated, the action depends upon the
-  value of the =:noweb= header argument.  If =:noweb yes=, then a
-  Noweb reference is expanded before evaluation.  If =:noweb no=,
-  the default, then the reference is not expanded before
-  evaluation.
-
-  *Note:* the default value, =:noweb no=, was chosen to ensure that
-  Org-babel does not break correct code in a language, such as Ruby,
-  where =<<arg>>= is a syntactically valid construct.  If =<<arg>>= is
-  not syntactically valid in languages that you use, then please
-  consider [[*System%20wide][setting the default value]].
-
-  An example that uses the Noweb reference syntax is provided in the
-  [[literate programming example]].
-
-@section Key Bindings & Useful Functions
-
-  Org-babel re-binds many common Org-mode key sequences depending on
-  the context.  Within a source-code block the following sequences
-  are rebound:
-  | =C-c C-c= | [[function-org-babel-execute][org-babel-execute-src-block]]     |
-  | =C-c C-o= | [[function-org-babel-open-src-block-result][org-babel-open-src-block-result]] |
-  | =C-up=    | [[function-org-babel-load-in-session][org-babel-load-in-session]]       |
-  | =M-down=  | [[function-org-babel-pop-to-session][org-babel-pop-to-session]]        |
-
-  Org-babel also exposes a number of functions behind the common
-  =org-babel-key-prefix= of =C-c M-b=:
-@example
-  #+begin_src emacs-lisp :exports none
-     (lambda (binding
-       (list (format "\\C-c \\M-b %s"
-                     (car binding))
-             (format "[[function-%s][%s]]"
-                     (cdr binding) (cdr binding))))
-     org-babel-key-bindings)
-  #+end_src
-@end example
-
-  | =C-c M-b t= | [[function-org-babel-tangle][org-babel-tangle]]                  |
-  | =C-c M-b T= | [[function-org-babel-tangle-file][org-babel-tangle-file]]             |
-  | =C-c M-b e= | [[function-org-babel-execute-src-block][org-babel-execute-src-block]]       |
-  | =C-c M-b s= | [[function-org-babel-execute-subtree][org-babel-execute-subtree]]         |
-  | =C-c M-b b= | [[function-org-babel-execute-buffer][org-babel-execute-buffer]]          |
-  | =C-c M-b h= | [[function-org-babel-sha1-hash][org-babel-sha1-hash]]               |
-  | =C-c M-b g= | [[function-org-babel-goto-named-source-block][org-babel-goto-named-source-block]] |
-  | =C-c M-b l= | [[function-org-babel-lob-ingest][org-babel-lob-ingest]]              |
-
-@subsection Functions
-@subsubsection org-babel-execute-src-block
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-execute-src-block
-    :END:
-
-@example
-  org-babel-execute-src-block is an interactive Lisp function in
-  `org-babel.el'.
-
-  (org-babel-execute-src-block &optional ARG INFO PARAMS)
-
-  Execute the current source code block, and insert the results
-  into the buffer.  Source code execution and the collection and
-  formatting of results can be controlled through a variety of
-  header arguments.
-
-  Optionally supply a value for INFO in the form returned by
-  `org-babel-get-src-block-info'.
-
-  Optionally supply a value for PARAMS which will be merged with
-  the header arguments specified at the front of the source code
-  block.
-@end example
-
-@subsubsection org-babel-open-src-block-result
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-open-src-block-result
-    :END:
-
-@example
-  org-babel-open-src-block-result is an interactive Lisp function in
-  `org-babel.el'.
-
-  (org-babel-open-src-block-result &optional RE-RUN)
-
-  If `point' is on a src block then open the results of the
-  source code block, otherwise return nil.  With optional prefix
-  argument RE-RUN the source-code block is evaluated even if
-  results already exist.
-@end example
-
-@subsubsection org-babel-load-in-session
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-load-in-session
-    :END:
-
-@example
-  org-babel-load-in-session is an interactive Lisp function in
-  `org-babel.el'.
-
-  (org-babel-load-in-session &optional ARG INFO)
-
-  Load the body of the current source-code block.  Evaluate the
-  header arguments for the source block before entering the
-  session.  After loading the body this pops open the session.
-
-  [back]
-@end example
-
-@subsubsection org-babel-pop-to-session
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-pop-to-session
-    :END:
-
-@example
-  org-babel-pop-to-session is an interactive Lisp function in
-  `org-babel.el'.
-
-  (org-babel-pop-to-session &optional ARG INFO)
-
-  Pop to the session of the current source-code block.  If
-  called with a prefix argument then evaluate the header arguments
-  for the source block before entering the session.  Copy the body
-  of the source block to the kill ring.
-
-  [back]
-@end example
-
-@subsubsection org-babel-tangle
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-tangle
-    :END:
-
-@example
-  org-babel-tangle is an interactive Lisp function in
-  `org-babel-tangle.el'.
-
-  It is bound to C-c M-b t.
-
-  (org-babel-tangle &optional TARGET-FILE LANG)
-
-  Extract the bodies of all source code blocks from the current
-  file into their own source-specific files.  Optional argument
-  TARGET-FILE can be used to specify a default export file for all
-  source blocks.  Optional argument LANG can be used to limit the
-  exported source code blocks by language.
-@end example
-
-@subsubsection org-babel-execute-subtree
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-execute-subtree
-    :END:
-
-@example
-  org-babel-execute-subtree is an interactive Lisp function in
-  `org-babel.el'.
-
-  It is bound to C-c M-b s.
-
-  (org-babel-execute-subtree &optional ARG)
-
-  Replace EVAL snippets in the entire subtree.
-@end example
-
-@subsubsection org-babel-execute-buffer
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-execute-buffer
-    :END:
-
-@example
-  org-babel-execute-buffer is an interactive Lisp function in
-  `org-babel.el'.
-
-  It is bound to C-c M-b b.
-
-  (org-babel-execute-buffer &optional ARG)
-
-  Replace EVAL snippets in the entire buffer.
-@end example
-
-@subsubsection org-babel-sha1-hash
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-sha1-hash
-    :END:
-
-@example
-  org-babel-sha1-hash is an interactive Lisp function in `org-babel.el'.
-
-  It is bound to C-c M-b h.
-
-  (org-babel-sha1-hash &optional INFO)
-
-  Not documented.
-@end example
-
-@subsubsection org-babel-goto-named-source-block
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-goto-named-source-block
-    :END:
-
-@example
-  org-babel-goto-named-source-block is an interactive Lisp function in
-  `org-babel.el'.
-
-  It is bound to C-c M-b g.
-
-  (org-babel-goto-named-source-block &optional NAME)
-
-  Go to a named source-code block.
-@end example
-
-@subsubsection org-babel-lob-ingest
-    :PROPERTIES:
-    :CUSTOM_ID: function-org-babel-lob-ingest
-    :END:
-
-@example
-  org-babel-lob-ingest is an interactive Lisp function in
-  `org-babel-lob.el'.
-
-  It is bound to C-c M-b l.
-
-  (org-babel-lob-ingest &optional FILE)
-
-  Add all source-blocks defined in FILE to `org-babel-library-of-babel'.
-@end example
-
-@section Batch Execution
-It is possible to call Org-babel functions from the command line.
-This shell script calls [[function-org-babel-tangle][org-babel-tangle]] on every one of its
-arguments.
-
-Be sure to adjust the paths to fit your system.
-@example
-  #!/bin/sh
-  # -*- mode: shell-script -*-
-  #
-  # tangle a file with org-babel
-  #
-  DIR=`pwd`
-  FILES=""
-
-  # wrap each argument in the code required to call tangle on it
-  for i in $@@; do
-  FILES="$FILES \"$i\""
-  done
-
-  emacsclient \
-  --eval "(progn
-  (add-to-list 'load-path (expand-file-name \"~/src/org/lisp/\"))
-  (add-to-list 'load-path (expand-file-name \"~/src/org/contrib/lisp/\"))
-  (require 'org)(require 'org-exp)(require 'org-babel)
-  (mapc (lambda (file)
-         (find-file (expand-file-name file \"$DIR\"))
-         (org-babel-tangle)
-         (kill-buffer)) '($FILES)))"
-@end example
-
-@section Footnotes
-
-[fn:1] The former use of the =shell= identifier is now deprecated.
-
-[fn:2] As long as the interpreter executable is found on the remote
-machine: see the variable =tramp-remote-path=
-
-@node Miscellaneous, Hacking, Working With Source Code, Top
+@node Miscellaneous, Hacking, Publishing, Top
 @chapter Miscellaneous
 @chapter Miscellaneous
 
 
 @menu
 @menu