Added some tasks and bugs in rorg.org

rorg.org

@@ -3,8 +3,18 @@
 #+SEQ_TODO:  TODO OPEN PROPOSED | DONE RESOLVED REJECTED
 #+STARTUP: oddeven
 
-* Tasks [8/16]
-
+* Tasks [8/18]
+
+** PROPOSED re-implement R evaluation using ess-command or ess-execute
+   I can't see anything wrong with the current R evaluation code or
+   behaviour, but I think it would be good to use the ESS functions
+   from a political point of view. Plus of course it has the normal
+   benefits of an API (insulates us from any underlying changes etc). [DED]
+** PROPOSED make C-c C-c work anywhere within source code block?
+   This seems like it would be nice to me, but perhaps it would be
+   inefficient or ugly in implementation? I suppose you could search
+   forward, and if you find #+end_src before you find #+begin_src,
+   then you're inside one. [DED]
 ** TODO share litorgy
 how should we share litorgy?
 
@@ -312,8 +322,24 @@ This is currently working only with emacs lisp as in the following
 example in the [[* emacs lisp source reference][emacs lisp source reference]].
 
 
-* Bugs [5/5]
+* Bugs [5/7]
 
+** TODO with :results replace, non-table output doesn't replace table output
+   And vice versa. E.g. Try this first with table and then with len(table) [DED]
+#+begin_src python :var table=sandbox :results replace
+table
+#+end_src
+
+| 1 |         2 | 3 |
+| 4 | "schulte" | 6 |
+: 2
+
+
+** TODO org bug/request: prevent certain org behaviour within code blocks
+   E.g. [[]] gets recognised as a link (when there's text inside the
+   brackets). This is bad for R code at least, and more generally
+   could be argued to be inappropriate. Is it difficult to get org to
+   ignore text in code blocks? [DED]
 ** DONE extra quotes for nested string
 Well R appears to be reading the tables without issue...
 
@@ -566,13 +592,13 @@ To run these examples evaluate [[file:litorgy/litorgy-init.el][litorgy-init.el]]
 date
 #+end_src
 
-: Sun Apr  5 10:10:05 PDT 2009
+: Thu May 14 18:52:25 EDT 2009
 
 #+begin_src ruby
 Time.now
 #+end_src
 
-: Sat May 09 18:18:33 -0700 2009
+: Thu May 14 18:59:09 -0400 2009
 
 #+begin_src python
 "Hello World"
@@ -585,11 +611,11 @@ Time.now
 
 #+begin_src R :results replace
 a <- 9
-b <- 17
+b <- 14
 a + b
 #+end_src
 
-: 26
+: 23
 
 #+begin_src R
 hist(rgamma(20,3,3))
@@ -604,8 +630,8 @@ of the source code block into an org table.  It's using the classic
 out...
 
 1. evaluate [[file:litorgy/init.el]] to load litorgy and friends
-2. evaluate the transpose definition =\C-u \C-c\C-c= on the beginning of
-   the source block (prefix arg to inhibit output)
+2. evaluate the transpose definition =\C-c\C-c= on the beginning of
+   the source block
 3. evaluate the next source code block, this should read in the table
    because of the =:var table=previous=, then transpose the table, and
    finally it should insert the transposed table into the buffer
@@ -618,6 +644,7 @@ out...
   (apply #'mapcar* #'list table))
 #+end_src
 
+
 #+TBLNAME: sandbox
 | 1 |       2 | 3 |
 | 4 | schulte | 6 |
@@ -626,9 +653,6 @@ out...
 (transpose table)
 #+end_src
 
-| 1 |         4 |
-| 2 | "schulte" |
-| 3 |         6 |
 
 #+begin_src emacs-lisp
 '(1 2 3 4 5)
@@ -658,11 +682,12 @@ table
 | 4 | "schulte" | 6 |
 
 #+begin_src python :var table=sandbox :results replace
-table
+len(table)
 #+end_src
 
-| 1 |         2 | 3 |
-| 4 | "schulte" | 6 |
+: 2
+
+| "__add__" | "__class__" | "__contains__" | "__delattr__" | "__delitem__" | "__delslice__" | "__doc__" | "__eq__" | "__format__" | "__ge__" | "__getattribute__" | "__getitem__" | "__getslice__" | "__gt__" | "__hash__" | "__iadd__" | "__imul__" | "__init__" | "__iter__" | "__le__" | "__len__" | "__lt__" | "__mul__" | "__ne__" | "__new__" | "__reduce__" | "__reduce_ex__" | "__repr__" | "__reversed__" | "__rmul__" | "__setattr__" | "__setitem__" | "__setslice__" | "__sizeof__" | "__str__" | "__subclasshook__" | "append" | "count" | "extend" | "index" | "insert" | "pop" | "remove" | "reverse" | "sort" |
 
 *** (sandbox table) R
 
@@ -675,6 +700,26 @@ x <- c(rnorm(10, mean=-3, sd=1), rnorm(10, mean=3, sd=1))
 x
 #+end_src
 
+| -3.35473133869346 |
+|    -2.45714878661 |
+| -3.32819924928633 |
+| -2.97310212756194 |
+| -2.09640758369576 |
+| -5.06054014378736 |
+| -2.20713700711221 |
+| -1.37618039712037 |
+| -1.95839385821742 |
+| -3.90407396475502 |
+|  2.51168071590226 |
+|  3.96753011570494 |
+|  3.31793212627865 |
+|  1.99829753972341 |
+|  4.00403686419829 |
+|  4.63723764452927 |
+|  3.94636744261313 |
+|  3.58355906547775 |
+|  3.01563442274226 |
+|   1.7634976849927 |
 #+begin_src R var tabel=sandbox_r :results replace
 tabel
 #+end_src
@@ -691,16 +736,18 @@ they are imported as org-mode tables...
 ls -l
 #+end_src
 
-| "total"      | 224 | ""         | ""      |    "" | ""    | "" | "" | ""                 |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" | 35147 | "Apr" | 15 | 14 | "COPYING"          |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" |   277 | "Apr" | 15 | 14 | "README.markdown"  |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" |    57 | "Apr" | 15 | 14 | "block"            |
-| "drwxr-xr-x" |   6 | "eschulte" | "staff" |   204 | "Apr" | 15 | 14 | "existing_tools"   |
-| "drwxr-xr-x" |  12 | "eschulte" | "staff" |   408 | "May" |  9 | 18 | "litorgy"          |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" |   790 | "May" |  6 |  6 | "litorgy.org"      |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" | 49904 | "May" |  9 | 18 | "rorg.org"         |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" |  5469 | "Apr" | 26 | 13 | "test-export.html" |
-| "-rw-r--r--" |   1 | "eschulte" | "staff" |   972 | "Apr" | 26 | 13 | "test-export.org"  |
+| "total"      | 208 | ""    | ""    |    "" |   "" | "" | ""                |
+| "-rw-r--r--" |   1 | "dan" | "dan" |    57 | 2009 | 15 | "block"           |
+| "-rw-r--r--" |   1 | "dan" | "dan" | 35147 | 2009 | 15 | "COPYING"         |
+| "-rw-r--r--" |   1 | "dan" | "dan" |   722 | 2009 | 18 | "examples.org"    |
+| "drwxr-xr-x" |   4 | "dan" | "dan" |  4096 | 2009 | 19 | "existing_tools"  |
+| "-rw-r--r--" |   1 | "dan" | "dan" |  2207 | 2009 | 14 | "intro.org"       |
+| "drwxr-xr-x" |   2 | "dan" | "dan" |  4096 | 2009 | 18 | "litorgy"         |
+| "-rw-r--r--" |   1 | "dan" | "dan" |   277 | 2009 | 20 | "README.markdown" |
+| "-rw-r--r--" |   1 | "dan" | "dan" | 11837 | 2009 | 18 | "rorg.html"       |
+| "-rw-r--r--" |   1 | "dan" | "dan" | 61829 | 2009 | 19 | "#rorg.org#"      |
+| "-rw-r--r--" |   1 | "dan" | "dan" | 60190 | 2009 | 19 | "rorg.org"        |
+| "-rw-r--r--" |   1 | "dan" | "dan" |   972 | 2009 | 11 | "test-export.org" |
 
 
 ** silent evaluation
@@ -709,14 +756,18 @@ ls -l
 :im_the_results
 #+end_src
 
+: :im_the_results
+
 #+begin_src ruby :results silent
 :im_the_results
 #+end_src
 
 #+begin_src ruby :results replace
-:im_the_results
+:im_the_results_
 #+end_src
 
+: :im_the_results_
+
 
 ** (sandbox) referencing other source blocks
 Doing this in emacs-lisp first because it's trivial to convert
@@ -737,6 +788,8 @@ used in the calculations of the second source block.
 (* first 3)
 #+end_src
 
+: 18
+
 This example is the same as the previous only the variable being
 passed through is a table rather than a number.
 
@@ -758,6 +811,8 @@ passed through is a table rather than a number.
 (transpose table)
 #+end_src
 
+| 1 |         2 | 3 |
+| 4 | "schulte" | 6 |
 *** ruby python
 Now working for ruby
 
@@ -770,8 +825,6 @@ Now working for ruby
 2 * other
 #+end_src
 
-: 178
-
 and for python
 
 #+SRCNAME: start_two
@@ -783,8 +836,6 @@ and for python
 another*3
 #+end_src
 
-: 294
-
 *** mixed languages
 Since all variables are converted into Emacs Lisp it is no problem to
 reference variables specified in another language.
@@ -842,20 +893,20 @@ inline source code blocks) [[file:test-export.org]]
 
 : 15
 
-#+begin_src emacs-lisp :var result=triple(n=2, m=98) :results replace
+#+begin_src emacs-lisp :var result=triple(n=3, m=98) :results replace
 result
 #+end_src
 
-: 6
+: 294
 
 The following just demonstrates the ability to assign variables to
 literal values, which was not implemented until recently.
 
 #+begin_src ruby :var num="eric" :results replace
-num+" schulte"
+num+" schulte "
 #+end_src
 
-: "eric schulte"
+: "eric schulte "
 
 
 ** (sandbox) inline source blocks
@@ -874,7 +925,7 @@ arguments.  src_ruby[:var n=fibbd( n = 0 )]{n}
 #+end_src
 
 #+srcname: fibbd
-#+begin_src emacs-lisp :var n=2 :results silent
+#+begin_src emacs-lisp :var n=4 :results silent
 (fibbd n)
 #+end_src
 
@@ -966,6 +1017,9 @@ should share this... I don't know if you guys use [[http://code.google.com/p/sma
 but if you do you might find this [[file:block][block-snippet]] org-mode snippet
 useful (I use it all the time).
 
+** Dan <2009-05-14 Thu 19:13>
+   1. removed prefix arg [[2. evaluate the transpose definition =\C-c\C-c= on the beginning of][here]]
+   2. added some tasks and bugs
 
 * Overview
 This project is basically about putting source code into org
@@ -1234,7 +1288,7 @@ internal to the source-code evaluation process?
     
 #+begin_src emacs-lisp
 '(:R-obj-name-1 tbl-name-or-id-1 :R-obj-name-2 tbl-name-or-id-2)
-#+end_src emacs-lisp
+#+end_src
 
 As a result of passing that option, the code would be able to access
 the data referenced by table-name-or-id-2 via read.table(R-obj-name-1).