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							- ;;; org-babel-sh.el --- org-babel functions for shell evaluation
 
- ;; Copyright (C) 2009 Eric Schulte
 
- ;; Author: Eric Schulte
 
- ;; Keywords: literate programming, reproducible research
 
- ;; Homepage: http://orgmode.org
 
- ;; Version: 0.01
 
- ;;; License:
 
- ;; This program is free software; you can redistribute it and/or modify
 
- ;; it under the terms of the GNU General Public License as published by
 
- ;; the Free Software Foundation; either version 3, or (at your option)
 
- ;; any later version.
 
- ;;
 
- ;; This program is distributed in the hope that it will be useful,
 
- ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
 
- ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 
- ;; GNU General Public License for more details.
 
- ;;
 
- ;; You should have received a copy of the GNU General Public License
 
- ;; along with GNU Emacs; see the file COPYING.  If not, write to the
 
- ;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
 
- ;; Boston, MA 02110-1301, USA.
 
- ;;; Commentary:
 
- ;; Org-Babel support for evaluating shell source code.
 
- ;;; Code:
 
- (require 'org-babel)
 
- (require 'shell)
 
- (org-babel-add-interpreter "sh")
 
- (add-to-list 'org-babel-tangle-langs '("sh" "sh" "#!/usr/bin/env sh"))
 
- (defun org-babel-execute:sh (body params)
 
-   "Execute a block of Shell commands with org-babel.  This
 
- function is called by `org-babel-execute-src-block'."
 
-   (message "executing Shell source code block")
 
-   (let* ((vars (org-babel-ref-variables params))
 
-          (result-params (split-string (or (cdr (assoc :results params)) "")))
 
-          (result-type (cond ((member "output" result-params) 'output)
 
-                             ((member "value" result-params) 'value)
 
-                             (t 'value)))
 
-          (full-body (concat
 
-                      (mapconcat ;; define any variables
 
-                       (lambda (pair)
 
-                         (format "%s=%s"
 
-                                 (car pair)
 
-                                 (org-babel-sh-var-to-sh (cdr pair))))
 
-                       vars "\n") "\n" body "\n\n")) ;; then the source block body
 
-          (session (org-babel-sh-initiate-session (cdr (assoc :session params)))))
 
-     (org-babel-sh-evaluate session full-body result-type)))
 
- (defun org-babel-prep-session:sh (session params)
 
-   "Prepare SESSION according to the header arguments specified in PARAMS."
 
-   (let* ((session (org-babel-sh-initiate-session session))
 
-          (vars (org-babel-ref-variables params))
 
-          (var-lines (mapcar ;; define any variables
 
-                      (lambda (pair)
 
-                        (format "%s=%s"
 
-                                (car pair)
 
-                                (org-babel-sh-var-to-sh (cdr pair))))
 
-                      vars)))
 
-     (org-babel-comint-in-buffer session
 
-       (mapc (lambda (var)
 
-               (insert var) (comint-send-input nil t)
 
-               (org-babel-comint-wait-for-output session)) var-lines))))
 
- ;; helper functions
 
- (defun org-babel-sh-var-to-sh (var)
 
-   "Convert an elisp var into a string of shell commands
 
- specifying a var of the same value."
 
-   (if (listp var)
 
-       (concat "[" (mapconcat #'org-babel-sh-var-to-sh var ", ") "]")
 
-     (format "%S" var)))
 
- (defun org-babel-sh-table-or-results (results)
 
-   "If the results look like a table, then convert them into an
 
- Emacs-lisp table, otherwise return the results as a string."
 
-   (org-babel-read
 
-    (if (string-match "^\\[.+\\]$" results)
 
-        (org-babel-read
 
-         (replace-regexp-in-string
 
-          "\\[" "(" (replace-regexp-in-string
 
-                     "\\]" ")" (replace-regexp-in-string
 
-                                ", " " " (replace-regexp-in-string
 
-                                          "'" "\"" results)))))
 
-      results)))
 
- (defvar org-babel-sh-buffers '(:default . nil))
 
- (defun org-babel-sh-session-buffer (session)
 
-   (cdr (assoc session org-babel-sh-buffers)))
 
- (defun org-babel-sh-initiate-session-by-key (&optional session)
 
-   "If there is not a current inferior-process-buffer in SESSION
 
- then create.  Return the initialized session."
 
-   (save-window-excursion
 
-     (let* ((session (if session (intern session) :default))
 
-            (sh-buffer (org-babel-sh-session-buffer session))
 
-            (newp (not (org-babel-comint-buffer-livep sh-buffer))))
 
-       (if (and sh-buffer (get-buffer sh-buffer) (not (buffer-live-p sh-buffer)))
 
-           (setq sh-buffer nil))
 
-       (shell sh-buffer)
 
-       (when newp
 
-         (setq sh-buffer (current-buffer))
 
-         (org-babel-comint-wait-for-output sh-buffer))
 
-       (setq org-babel-sh-buffers (cons (cons session sh-buffer) (assq-delete-all session org-babel-sh-buffers)))
 
-       session)))
 
- (defun org-babel-sh-initiate-session (&optional session)
 
-   (unless (string= session "none")
 
-     (org-babel-sh-session-buffer (org-babel-sh-initiate-session-by-key session))))
 
- (defvar org-babel-sh-eoe-indicator "echo 'org_babel_sh_eoe'"
 
-   "Used to indicate that evaluation is has completed.")
 
- (defvar org-babel-sh-eoe-output "org_babel_sh_eoe"
 
-   "Used to indicate that evaluation is has completed.")
 
- (defun org-babel-sh-evaluate (buffer body &optional result-type)
 
-   "Pass BODY to the Shell process in BUFFER.  If RESULT-TYPE equals
 
- 'output then return a list of the outputs of the statements in
 
- BODY, if RESULT-TYPE equals 'value then return the value of the
 
- last statement in BODY."
 
-   (if (not session)
 
-       ;; external process evaluation
 
-       (save-window-excursion
 
-         (with-temp-buffer
 
-           (insert body)
 
-           ;; (message "buffer=%s" (buffer-string)) ;; debugging
 
-           (shell-command-on-region (point-min) (point-max) "sh" 'replace)
 
- 	  (case result-type
 
- 	    (output (buffer-string))
 
- 	    (value ;; TODO: figure out how to return non-output values from shell scripts
 
- 	     (let ((tmp-file (make-temp-file "org-babel-sh"))
 
- 		   (results (buffer-string)))
 
- 	       (with-temp-file tmp-file (insert results))
 
- 	       (org-babel-import-elisp-from-file tmp-file))))))
 
-     ;; comint session evaluation
 
-     (let* ((tmp-file (make-temp-file "org-babel-sh"))
 
- 	   (full-body (mapconcat #'org-babel-chomp
 
-                                  (list body org-babel-sh-eoe-indicator) "\n"))
 
-            (raw (org-babel-comint-with-output buffer org-babel-sh-eoe-output nil
 
-                   (insert full-body) (comint-send-input nil t)))
 
-            (results (cdr (member org-babel-sh-eoe-output
 
-                                  (reverse (mapcar #'org-babel-sh-strip-weird-long-prompt
 
-                                                   (mapcar #'org-babel-trim raw)))))))
 
-       ;; (message (replace-regexp-in-string "%" "%%" (format "processed-results=%S" results))) ;; debugging
 
-       (or (case result-type
 
-             (output (org-babel-trim (mapconcat #'org-babel-trim (reverse results) "\n")))
 
-             (value (with-temp-file tmp-file (insert (car results)))
 
- 		   (org-babel-import-elisp-from-file tmp-file)))) "")))
 
- (defun org-babel-sh-strip-weird-long-prompt (string)
 
-   (while (string-match "^% +[\r\n$]+ *" string)
 
-     (setq string (substring string (match-end 0))))
 
-   string)
 
- (provide 'org-babel-sh)
 
- ;;; org-babel-sh.el ends here
 
 
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