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- ;;; org-babel-python.el --- org-babel functions for python evaluation
- ;; Copyright (C) 2009 Eric Schulte
- ;; Author: Eric Schulte
- ;; Keywords: literate programming, reproducible research
- ;; Homepage: http://orgmode.org
- ;; Version: 0.01
- ;;; License:
- ;; This program is free software; you can redistribute it and/or modify
- ;; it under the terms of the GNU General Public License as published by
- ;; the Free Software Foundation; either version 3, or (at your option)
- ;; any later version.
- ;;
- ;; This program is distributed in the hope that it will be useful,
- ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;; GNU General Public License for more details.
- ;;
- ;; You should have received a copy of the GNU General Public License
- ;; along with GNU Emacs; see the file COPYING. If not, write to the
- ;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
- ;; Boston, MA 02110-1301, USA.
- ;;; Commentary:
- ;; Org-Babel support for evaluating python source code.
- ;;; Code:
- (require 'org-babel)
- (require 'python)
- (org-babel-add-interpreter "python")
- (add-to-list 'org-babel-tangle-langs '("python" "py" "#!/usr/bin/env python"))
- (defun org-babel-execute:python (body params)
- "Execute a block of Python code with org-babel. This function is
- called by `org-babel-execute-src-block'."
- (message "executing Python source code block")
- (let* ((processed-params (org-babel-process-params params))
- (session (org-babel-python-initiate-session (first processed-params)))
- (vars (second processed-params))
- (result-params (third processed-params))
- (result-type (fourth processed-params))
- (full-body (concat
- (mapconcat ;; define any variables
- (lambda (pair)
- (format "%s=%s"
- (car pair)
- (org-babel-python-var-to-python (cdr pair))))
- vars "\n") "\n" (org-babel-trim body) "\n")) ;; then the source block body
-
- (result (org-babel-python-evaluate session full-body result-type)))
- (or (cdr (assoc :file params)) result)))
- (defun org-babel-prep-session:python (session params)
- "Prepare SESSION according to the header arguments specified in PARAMS."
- (let* ((session (org-babel-python-initiate-session session))
- (vars (org-babel-ref-variables params))
- (var-lines (mapcar ;; define any variables
- (lambda (pair)
- (format "%s=%s"
- (car pair)
- (org-babel-python-var-to-python (cdr pair))))
- vars)))
- (org-babel-comint-in-buffer session
- (mapc (lambda (var)
- (move-end-of-line 1) (insert var) (comint-send-input nil t)
- (org-babel-comint-wait-for-output session)) var-lines))
- session))
- (defun org-babel-load-session:python (session body params)
- "Load BODY into SESSION."
- (save-window-excursion
- (let ((buffer (org-babel-prep-session:python session params)))
- (with-current-buffer buffer
- (goto-char (process-mark (get-buffer-process (current-buffer))))
- (insert (org-babel-chomp body)))
- buffer)))
- ;; helper functions
- (defun org-babel-python-var-to-python (var)
- "Convert an elisp var into a string of python source code
- specifying a var of the same value."
- (if (listp var)
- (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
- (format "%S" var)))
- (defun org-babel-python-table-or-string (results)
- "If the results look like a list or tuple, then convert them into an
- Emacs-lisp table, otherwise return the results as a string."
- (org-babel-read
- (if (or (string-match "^\\[.+\\]$" results)
- (string-match "^(.+)$" results))
- (org-babel-read
- (concat "'"
- (replace-regexp-in-string
- "\\[" "(" (replace-regexp-in-string
- "\\]" ")" (replace-regexp-in-string
- ", " " " (replace-regexp-in-string
- "'" "\"" results))))))
- results)))
- (defvar org-babel-python-buffers '(:default . nil))
- (defun org-babel-python-session-buffer (session)
- (cdr (assoc session org-babel-python-buffers)))
- (defun org-babel-python-initiate-session-by-key (&optional session)
- "If there is not a current inferior-process-buffer in SESSION
- then create. Return the initialized session."
- (save-window-excursion
- (let* ((session (if session (intern session) :default))
- (python-buffer (org-babel-python-session-buffer session)))
- (run-python)
- (setq org-babel-python-buffers (cons (cons session python-buffer)
- (assq-delete-all session org-babel-python-buffers)))
- session)))
- (defun org-babel-python-initiate-session (&optional session params)
- (unless (string= session "none")
- (org-babel-python-session-buffer (org-babel-python-initiate-session-by-key session))))
- (defvar org-babel-python-last-value-eval "_"
- "When evaluated by Python this returns the return value of the last statement.")
- (defvar org-babel-python-pp-last-value-eval
- '("results = _"
- "import pprint"
- "org_babel_pp = pprint.PrettyPrinter()"
- "org_babel_pp.pprint(results)")
- "When evaluated by Python this pretty prints the value of the last statement.")
- (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
- "Used to indicate that evaluation is has completed.")
- (defvar org-babel-python-wrapper-method
- "
- def main():
- %s
- open('%s', 'w').write( str(main()) )")
- (defvar org-babel-python-pp-wrapper-method
- "
- import pprint
- def main():
- %s
- open('%s', 'w').write( pprint.pformat(main()) )")
- (defun org-babel-python-evaluate (buffer body &optional result-type)
- "Pass BODY to the Python process in BUFFER. If RESULT-TYPE equals
- 'output then return a list of the outputs of the statements in
- BODY, if RESULT-TYPE equals 'value then return the value of the
- last statement in BODY, as elisp."
- (if (not session)
- ;; external process evaluation
- (save-excursion
- (case result-type
- (output
- (with-temp-buffer
- (insert body)
- ;; (message "buffer=%s" (buffer-string)) ;; debugging
- (org-babel-shell-command-on-region (point-min) (point-max) "python" 'current-buffer 'replace)
- (buffer-string)))
- (value
- (let* ((tmp-file (make-temp-file "org-babel-python-results-")) exit-code
- (stderr
- (with-temp-buffer
- (insert
- (format
- (if (member "pp" result-params)
- org-babel-python-pp-wrapper-method
- org-babel-python-wrapper-method)
- (mapconcat
- (lambda (line) (format "\t%s" line))
- (split-string
- (org-remove-indentation (org-babel-trim body)) "[\r\n]") "\n")
- tmp-file))
- ;; (message "buffer=%s" (buffer-string)) ;; debugging
- (setq exit-code (org-babel-shell-command-on-region
- (point-min) (point-max) "python" nil 'replace (current-buffer)))
- (buffer-string))))
- (if (> exit-code 0) (org-babel-error-notify exit-code stderr))
- (let ((raw (with-temp-buffer
- (insert-file-contents (org-babel-maybe-remote-file tmp-file))
- (buffer-string))))
- (if (or (member "code" result-params) (member "pp" result-params))
- raw
- (org-babel-python-table-or-string raw)))))))
- ;; comint session evaluation
- (org-babel-comint-in-buffer buffer
- (let* ((raw (org-babel-comint-with-output buffer org-babel-python-eoe-indicator t
- ;; for some reason python is fussy, and likes enters after every input
- (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
- (split-string (org-babel-trim full-body) "[\r\n]+"))
- (comint-send-input nil t) (comint-send-input nil t)
- (if (member "pp" result-params)
- (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
- org-babel-python-pp-last-value-eval)
- (insert org-babel-python-last-value-eval))
- (comint-send-input nil t) (comint-send-input nil t)
- (insert org-babel-python-eoe-indicator)
- (comint-send-input nil t)))
- (results (delete org-babel-python-eoe-indicator
- (cdr (member org-babel-python-eoe-indicator
- (reverse (mapcar #'org-babel-trim raw)))))))
- (unless (or (member "code" result-params) (member "pp" result-params))
- (setq results (mapcar #'org-babel-python-read-string results)))
- (case result-type
- (output (org-babel-trim (mapconcat #'identity (reverse (cdr results)) "\n")))
- (value
- (if (or (member "code" result-params) (member "pp" result-params))
- (car results)
- (org-babel-python-table-or-string (org-babel-trim (car results))))))))))
- (defun org-babel-python-read-string (string)
- "Strip 's from around python string"
- (if (string-match "^'\\([^\000]+\\)'$" string)
- (match-string 1 string)
- string))
- (provide 'org-babel-python)
- ;;; org-babel-python.el ends here
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