org-babel-python.el 9.0 KB

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  1. ;;; org-babel-python.el --- org-babel functions for python evaluation
  2. ;; Copyright (C) 2009 Eric Schulte
  3. ;; Author: Eric Schulte
  4. ;; Keywords: literate programming, reproducible research
  5. ;; Homepage: http://orgmode.org
  6. ;; Version: 0.01
  7. ;;; License:
  8. ;; This program is free software; you can redistribute it and/or modify
  9. ;; it under the terms of the GNU General Public License as published by
  10. ;; the Free Software Foundation; either version 3, or (at your option)
  11. ;; any later version.
  12. ;;
  13. ;; This program is distributed in the hope that it will be useful,
  14. ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  15. ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
  16. ;; GNU General Public License for more details.
  17. ;;
  18. ;; You should have received a copy of the GNU General Public License
  19. ;; along with GNU Emacs; see the file COPYING. If not, write to the
  20. ;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
  21. ;; Boston, MA 02110-1301, USA.
  22. ;;; Commentary:
  23. ;; Org-Babel support for evaluating python source code.
  24. ;;; Code:
  25. (require 'org-babel)
  26. (require 'python)
  27. (org-babel-add-interpreter "python")
  28. (add-to-list 'org-babel-tangle-langs '("python" "py" "#!/usr/bin/env python"))
  29. (defun org-babel-execute:python (body params)
  30. "Execute a block of Python code with org-babel. This function is
  31. called by `org-babel-execute-src-block'."
  32. (message "executing Python source code block")
  33. (let* ((processed-params (org-babel-process-params params))
  34. (session (org-babel-python-initiate-session (first processed-params)))
  35. (vars (second processed-params))
  36. (result-params (third processed-params))
  37. (result-type (fourth processed-params))
  38. (full-body (concat
  39. (mapconcat ;; define any variables
  40. (lambda (pair)
  41. (format "%s=%s"
  42. (car pair)
  43. (org-babel-python-var-to-python (cdr pair))))
  44. vars "\n") "\n" (org-babel-trim body) "\n")) ;; then the source block body
  45. (result (org-babel-python-evaluate session full-body result-type)))
  46. (or (cdr (assoc :file params)) result)))
  47. (defun org-babel-prep-session:python (session params)
  48. "Prepare SESSION according to the header arguments specified in PARAMS."
  49. (let* ((session (org-babel-python-initiate-session session))
  50. (vars (org-babel-ref-variables params))
  51. (var-lines (mapcar ;; define any variables
  52. (lambda (pair)
  53. (format "%s=%s"
  54. (car pair)
  55. (org-babel-python-var-to-python (cdr pair))))
  56. vars)))
  57. (org-babel-comint-in-buffer session
  58. (mapc (lambda (var)
  59. (move-end-of-line 1) (insert var) (comint-send-input nil t)
  60. (org-babel-comint-wait-for-output session)) var-lines))
  61. session))
  62. (defun org-babel-load-session:python (session body params)
  63. "Load BODY into SESSION."
  64. (save-window-excursion
  65. (let ((buffer (org-babel-prep-session:python session params)))
  66. (with-current-buffer buffer
  67. (goto-char (process-mark (get-buffer-process (current-buffer))))
  68. (insert (org-babel-chomp body)))
  69. buffer)))
  70. ;; helper functions
  71. (defun org-babel-python-var-to-python (var)
  72. "Convert an elisp var into a string of python source code
  73. specifying a var of the same value."
  74. (if (listp var)
  75. (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
  76. (format "%S" var)))
  77. (defun org-babel-python-table-or-string (results)
  78. "If the results look like a list or tuple, then convert them into an
  79. Emacs-lisp table, otherwise return the results as a string."
  80. (org-babel-read
  81. (if (or (string-match "^\\[.+\\]$" results)
  82. (string-match "^(.+)$" results))
  83. (org-babel-read
  84. (replace-regexp-in-string
  85. "\\[" "(" (replace-regexp-in-string
  86. "\\]" ")" (replace-regexp-in-string
  87. ", " " " (replace-regexp-in-string
  88. "'" "\"" results)))))
  89. results)))
  90. (defvar org-babel-python-buffers '(:default . nil))
  91. (defun org-babel-python-session-buffer (session)
  92. (cdr (assoc session org-babel-python-buffers)))
  93. (defun org-babel-python-initiate-session-by-key (&optional session)
  94. "If there is not a current inferior-process-buffer in SESSION
  95. then create. Return the initialized session."
  96. (save-window-excursion
  97. (let* ((session (if session (intern session) :default))
  98. (python-buffer (org-babel-python-session-buffer session)))
  99. (run-python)
  100. (setq org-babel-python-buffers (cons (cons session python-buffer)
  101. (assq-delete-all session org-babel-python-buffers)))
  102. session)))
  103. (defun org-babel-python-initiate-session (&optional session)
  104. (unless (string= session "none")
  105. (org-babel-python-session-buffer (org-babel-python-initiate-session-by-key session))))
  106. (defvar org-babel-python-last-value-eval "_"
  107. "When evaluated by Python this returns the return value of the last statement.")
  108. (defvar org-babel-python-pp-last-value-eval
  109. '("results = _"
  110. "import pprint"
  111. "org_babel_pp = pprint.PrettyPrinter()"
  112. "org_babel_pp.pprint(results)")
  113. "When evaluated by Python this pretty prints the value of the last statement.")
  114. (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
  115. "Used to indicate that evaluation is has completed.")
  116. (defvar org-babel-python-wrapper-method
  117. "
  118. def main():
  119. %s
  120. open('%s', 'w').write( str(main()) )")
  121. (defvar org-babel-python-pp-wrapper-method
  122. "
  123. import pprint
  124. def main():
  125. %s
  126. open('%s', 'w').write( pprint.pformat(main()) )")
  127. (defun org-babel-python-evaluate (buffer body &optional result-type)
  128. "Pass BODY to the Python process in BUFFER. If RESULT-TYPE equals
  129. 'output then return a list of the outputs of the statements in
  130. BODY, if RESULT-TYPE equals 'value then return the value of the
  131. last statement in BODY, as elisp."
  132. (if (not session)
  133. ;; external process evaluation
  134. (save-window-excursion
  135. (case result-type
  136. (output
  137. (with-temp-buffer
  138. (insert body)
  139. ;; (message "buffer=%s" (buffer-string)) ;; debugging
  140. (shell-command-on-region (point-min) (point-max) "python" 'replace)
  141. (buffer-string)))
  142. (value
  143. (let ((tmp-file (make-temp-file "python-functional-results")))
  144. (with-temp-buffer
  145. (insert
  146. (format
  147. (if (member "pp" result-params)
  148. org-babel-python-pp-wrapper-method
  149. org-babel-python-wrapper-method)
  150. (mapconcat
  151. (lambda (line) (format "\t%s" line))
  152. (split-string
  153. (org-remove-indentation (org-babel-trim body)) "[\r\n]") "\n")
  154. tmp-file))
  155. ;; (message "buffer=%s" (buffer-string)) ;; debugging
  156. (shell-command-on-region (point-min) (point-max) "python"))
  157. (let ((raw (with-temp-buffer
  158. (insert-file-contents (org-babel-maybe-remote-file tmp-file))
  159. (buffer-string))))
  160. (if (or (member "code" result-params) (member "pp" result-params))
  161. raw
  162. (org-babel-python-table-or-string raw)))))))
  163. ;; comint session evaluation
  164. (org-babel-comint-in-buffer buffer
  165. (let* ((raw (org-babel-comint-with-output buffer org-babel-python-eoe-indicator t
  166. ;; for some reason python is fussy, and likes enters after every input
  167. (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
  168. (split-string (org-babel-trim full-body) "[\r\n]+"))
  169. (comint-send-input nil t) (comint-send-input nil t)
  170. (if (member "pp" result-params)
  171. (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
  172. org-babel-python-pp-last-value-eval)
  173. (insert org-babel-python-last-value-eval))
  174. (comint-send-input nil t) (comint-send-input nil t)
  175. (insert org-babel-python-eoe-indicator)
  176. (comint-send-input nil t)))
  177. (results (delete org-babel-python-eoe-indicator
  178. (cdr (member org-babel-python-eoe-indicator
  179. (reverse (mapcar #'org-babel-trim raw)))))))
  180. (unless (or (member "code" result-params) (member "pp" result-params))
  181. (setq results (mapcar #'org-babel-python-read-string results)))
  182. (case result-type
  183. (output (org-babel-trim (mapconcat #'identity (reverse (cdr results)) "\n")))
  184. (value
  185. (if (or (member "code" result-params) (member "pp" result-params))
  186. (car results)
  187. (org-babel-python-table-or-string (org-babel-trim (car results))))))))))
  188. (defun org-babel-python-read-string (string)
  189. "Strip 's from around python string"
  190. (if (string-match "^'\\([^\000]+\\)'$" string)
  191. (match-string 1 string)
  192. string))
  193. (provide 'org-babel-python)
  194. ;;; org-babel-python.el ends here