| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224 | 
							- ;;; org-babel-python.el --- org-babel functions for python evaluation
 
- ;; Copyright (C) 2009 Eric Schulte
 
- ;; Author: Eric Schulte
 
- ;; Keywords: literate programming, reproducible research
 
- ;; Homepage: http://orgmode.org
 
- ;; Version: 0.01
 
- ;;; License:
 
- ;; This program is free software; you can redistribute it and/or modify
 
- ;; it under the terms of the GNU General Public License as published by
 
- ;; the Free Software Foundation; either version 3, or (at your option)
 
- ;; any later version.
 
- ;;
 
- ;; This program is distributed in the hope that it will be useful,
 
- ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
 
- ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 
- ;; GNU General Public License for more details.
 
- ;;
 
- ;; You should have received a copy of the GNU General Public License
 
- ;; along with GNU Emacs; see the file COPYING.  If not, write to the
 
- ;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
 
- ;; Boston, MA 02110-1301, USA.
 
- ;;; Commentary:
 
- ;; Org-Babel support for evaluating python source code.
 
- ;;; Code:
 
- (require 'org-babel)
 
- (require 'python)
 
- (org-babel-add-interpreter "python")
 
- (add-to-list 'org-babel-tangle-langs '("python" "py" "#!/usr/bin/env python"))
 
- (defun org-babel-execute:python (body params)
 
-   "Execute a block of Python code with org-babel.  This function is
 
- called by `org-babel-execute-src-block'."
 
-   (message "executing Python source code block")
 
-   (let* ((processed-params (org-babel-process-params params))
 
-          (session (org-babel-python-initiate-session (first processed-params)))
 
-          (vars (second processed-params))
 
-          (result-params (third processed-params))
 
-          (result-type (fourth processed-params))
 
-          (full-body (concat
 
-                      (mapconcat ;; define any variables
 
-                       (lambda (pair)
 
-                         (format "%s=%s"
 
-                                 (car pair)
 
-                                 (org-babel-python-var-to-python (cdr pair))))
 
-                       vars "\n") "\n" (org-babel-trim body) "\n")) ;; then the source block body
 
-          
 
-          (result (org-babel-python-evaluate session full-body result-type)))
 
-     (or (cdr (assoc :file params)) result)))
 
- (defun org-babel-prep-session:python (session params)
 
-   "Prepare SESSION according to the header arguments specified in PARAMS."
 
-   (let* ((session (org-babel-python-initiate-session session))
 
-          (vars (org-babel-ref-variables params))
 
-          (var-lines (mapcar ;; define any variables
 
-                      (lambda (pair)
 
-                        (format "%s=%s"
 
-                                (car pair)
 
-                                (org-babel-python-var-to-python (cdr pair))))
 
-                      vars)))
 
-     (org-babel-comint-in-buffer session
 
-       (mapc (lambda (var)
 
-               (move-end-of-line 1) (insert var) (comint-send-input nil t)
 
-               (org-babel-comint-wait-for-output session)) var-lines))
 
-     session))
 
- (defun org-babel-load-session:python (session body params)
 
-   "Load BODY into SESSION."
 
-   (save-window-excursion
 
-     (let ((buffer (org-babel-prep-session:python session params)))
 
-       (with-current-buffer buffer
 
-         (goto-char (process-mark (get-buffer-process (current-buffer))))
 
-         (insert (org-babel-chomp body)))
 
-       buffer)))
 
- ;; helper functions
 
- (defun org-babel-python-var-to-python (var)
 
-   "Convert an elisp var into a string of python source code
 
- specifying a var of the same value."
 
-   (if (listp var)
 
-       (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
 
-     (format "%S" var)))
 
- (defun org-babel-python-table-or-string (results)
 
-   "If the results look like a list or tuple, then convert them into an
 
- Emacs-lisp table, otherwise return the results as a string."
 
-   (org-babel-read
 
-    (if (or (string-match "^\\[.+\\]$" results)
 
- 	   (string-match "^(.+)$" results))
 
-        (org-babel-read
 
-         (replace-regexp-in-string
 
-          "\\[" "(" (replace-regexp-in-string
 
-                     "\\]" ")" (replace-regexp-in-string
 
-                                ", " " " (replace-regexp-in-string
 
-                                          "'" "\"" results)))))
 
-      results)))
 
- (defvar org-babel-python-buffers '(:default . nil))
 
- (defun org-babel-python-session-buffer (session)
 
-   (cdr (assoc session org-babel-python-buffers)))
 
- (defun org-babel-python-initiate-session-by-key (&optional session)
 
-   "If there is not a current inferior-process-buffer in SESSION
 
- then create.  Return the initialized session."
 
-   (save-window-excursion
 
-     (let* ((session (if session (intern session) :default))
 
-            (python-buffer (org-babel-python-session-buffer session)))
 
-       (run-python)
 
-       (setq org-babel-python-buffers (cons (cons session python-buffer)
 
- 					   (assq-delete-all session org-babel-python-buffers)))
 
-       session)))
 
- (defun org-babel-python-initiate-session (&optional session params)
 
-   (unless (string= session "none")
 
-     (org-babel-python-session-buffer (org-babel-python-initiate-session-by-key session))))
 
- (defvar org-babel-python-last-value-eval "_"
 
-   "When evaluated by Python this returns the return value of the last statement.")
 
- (defvar org-babel-python-pp-last-value-eval
 
-   '("results = _"
 
-     "import pprint"
 
-     "org_babel_pp = pprint.PrettyPrinter()"
 
-     "org_babel_pp.pprint(results)")
 
-   "When evaluated by Python this pretty prints the value of the last statement.")
 
- (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
 
-   "Used to indicate that evaluation is has completed.")
 
- (defvar org-babel-python-wrapper-method
 
-   "
 
- def main():
 
- %s
 
- open('%s', 'w').write( str(main()) )")
 
- (defvar org-babel-python-pp-wrapper-method
 
-   "
 
- import pprint
 
- def main():
 
- %s
 
- open('%s', 'w').write( pprint.pformat(main()) )")
 
- (defun org-babel-python-evaluate (buffer body &optional result-type)
 
-   "Pass BODY to the Python process in BUFFER.  If RESULT-TYPE equals
 
- 'output then return a list of the outputs of the statements in
 
- BODY, if RESULT-TYPE equals 'value then return the value of the
 
- last statement in BODY, as elisp."
 
-   (if (not session)
 
-       ;; external process evaluation
 
-       (save-excursion
 
-         (case result-type
 
-           (output
 
-            (with-temp-buffer
 
-              (insert body)
 
-              ;; (message "buffer=%s" (buffer-string)) ;; debugging
 
-              (org-babel-shell-command-on-region (point-min) (point-max) "python" 'current-buffer 'replace)
 
-              (buffer-string)))
 
-           (value
 
-            (let* ((tmp-file (make-temp-file "org-babel-python-results-")) exit-code
 
- 		  (stderr
 
- 		   (with-temp-buffer
 
- 		     (insert
 
- 		      (format
 
- 		       (if (member "pp" result-params)
 
- 			   org-babel-python-pp-wrapper-method
 
- 			 org-babel-python-wrapper-method)
 
- 		       (mapconcat
 
- 			(lambda (line) (format "\t%s" line))
 
- 			(split-string
 
- 			 (org-remove-indentation (org-babel-trim body)) "[\r\n]") "\n")
 
- 		       tmp-file))
 
- 		     ;; (message "buffer=%s" (buffer-string)) ;; debugging
 
- 		     (setq exit-code (org-babel-shell-command-on-region
 
- 				      (point-min) (point-max) "python" nil 'replace (current-buffer)))
 
- 		     (buffer-string))))
 
- 	     (if (> exit-code 0) (org-babel-error-notify exit-code stderr))
 
-              (let ((raw (with-temp-buffer
 
- 			  (insert-file-contents (org-babel-maybe-remote-file tmp-file))
 
- 			  (buffer-string))))
 
-                (if (or (member "code" result-params) (member "pp" result-params))
 
-                    raw
 
-                  (org-babel-python-table-or-string raw)))))))
 
-     ;; comint session evaluation
 
-     (org-babel-comint-in-buffer buffer
 
-       (let* ((raw (org-babel-comint-with-output buffer org-babel-python-eoe-indicator t
 
-                     ;; for some reason python is fussy, and likes enters after every input
 
-                     (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
 
-                           (split-string (org-babel-trim full-body) "[\r\n]+"))
 
-                     (comint-send-input nil t) (comint-send-input nil t)
 
-                     (if (member "pp" result-params)
 
-                         (mapc (lambda (statement) (insert statement) (comint-send-input nil t))
 
-                               org-babel-python-pp-last-value-eval)
 
-                       (insert org-babel-python-last-value-eval))
 
-                     (comint-send-input nil t) (comint-send-input nil t)
 
-                     (insert org-babel-python-eoe-indicator)
 
-                     (comint-send-input nil t)))
 
-              (results (delete org-babel-python-eoe-indicator
 
-                               (cdr (member org-babel-python-eoe-indicator
 
-                                            (reverse (mapcar #'org-babel-trim raw)))))))
 
-         (unless (or (member "code" result-params) (member "pp" result-params))
 
-           (setq results (mapcar #'org-babel-python-read-string results)))
 
-         (case result-type
 
- 	  (output (org-babel-trim (mapconcat #'identity (reverse (cdr results)) "\n")))
 
- 	  (value
 
-            (if (or (member "code" result-params) (member "pp" result-params))
 
-                (car results)
 
-              (org-babel-python-table-or-string (org-babel-trim (car results))))))))))
 
- (defun org-babel-python-read-string (string)
 
-   "Strip 's from around python string"
 
-   (if (string-match "^'\\([^\000]+\\)'$" string)
 
-       (match-string 1 string)
 
-     string))
 
- (provide 'org-babel-python)
 
- ;;; org-babel-python.el ends here
 
 
  |